Scaffold Ga0208030_1047903

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208030_1047903

Scaffold Ga0208030_1047903

Overview

Basic Information
Taxon OID	3300025282 Open in IMG/M
Scaffold ID	Ga0208030_1047903 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1228
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.38	Long. (^o)	4.65	Alt. (m)		Depth (m)	2720
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F003617	Metagenome / Metatranscriptome	477	Y
F060030	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10479031	F060030	GAG	MVIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLVSRLVVFFLAAFLINAYFQATISGNIWLNSLGSFVGMKFPQSLPQWVTDLFTVGYHNINFWQIVQIIAII
Ga0208030_10479032	F000730	AGG	LVNELIPAELMPLVWFSVISVTVYVFFRVFSSTLKEKFRQTNLSRKKEQNTTNTDGQIDNLIDNAPKILREINQQIAQQKSSGVTDDQMKGLYDRKKMIELVTSNQDIINLGKPVVKLAVNWVTKFMR
Ga0208030_10479033	F003617	N/A	VYSDTDSGILLNEGNDTAFSQTYSYNPDMTAVCYALHLTAPMALICSAFTSGTLNVGALHLKITERSTNNRLLYENTFQSGAANLTGTGTSLHIFQRDVVETILVRKGNPIDILVELITVTTGTNTRQEGIVNLAPYIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.