NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208030_1121351

Scaffold Ga0208030_1121351


Overview

Basic Information
Taxon OID3300025282 Open in IMG/M
Scaffold IDGa0208030_1121351 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)639
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.38Long. (o)4.65Alt. (m)Depth (m)2720
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012071Metagenome284Y
F060347Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0208030_11213511F060347AGGMAKRKAYAPFSLTSEAGVAQTPVEGYIDVEQKIYPTVSTGTVNENGKWAGVKSDDTDFFGITTHPAVGNGGDTLSPDTGTLNFIDMTGFNDIFIAIKPTNGGNCAIKAVMGPDTNRFANLQPVNPATPLRGNRAGTQVASDLLFDTAESLTADVWNIFY
Ga0208030_11213512F012071N/AGTPASNGTTNPPFKCDVAIPVTASNQVSIAGAMDTDIGTAQMSVCLIFA
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