NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1000282

Scaffold Ga0208048_1000282


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1000282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27221
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (47.22%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F002621Metagenome / Metatranscriptome542Y
F002843Metagenome / Metatranscriptome526Y
F005206Metagenome / Metatranscriptome408Y
F010688Metagenome / Metatranscriptome300Y
F014610Metagenome / Metatranscriptome261N
F016803Metagenome / Metatranscriptome244Y
F058105Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0208048_100028214F058105N/AMTPHPTIIAAAKLLKEKWPTCSTWNNEELLNWIGIFNKVRQFGIVQNENGECVGVGAVRFLNSVEEAKDINNNFADGHIAWIEMVVGTEPRAVQTLWLAMMNMCSENVTKLGGVRKGVSRLYDFERYFKLLMNERICYGRNIQSA
Ga0208048_100028220F002621GAGMCSTATLRRIYGMIWLVVLPIFPGCQMTKVVLVPHGDPVMLAKPVKASVYGFDRDKKLVGPSNVTLPAGWYVLPKE
Ga0208048_100028223F001272N/AMITIQLTEQQVQSLLQLIDIAIKAGGYQNAKVGVPLADVIIDAANAAKAQ
Ga0208048_100028224F002843N/AMIDSIPTVQVQVNQNNSLFVTTGIDYDKDGSIVGSEITEQYTLNPGDSLDGQPSEVVAIANALWTADVVAAYQAAVEAAKPVVVADDEPVVEAPVA
Ga0208048_100028228F014610GAGGMPIYTFENKGRSMEHIAPMNTDSIVIKGERWTRQPVARFGVTGFAREAELKDHVKRGFSRMEDRQGSRFESTFTKNQIRKIWDI
Ga0208048_100028229F010688N/AMKPKTATIMVIAVGPRGHHQKLGGAPSSDSACGCEEADNNAPMIAIPVEALSTDTEDGQGAMPEVGDEVMLEDVRGVLKKLDNGEAYIEIQSVNGMPAEYEKTGEDEPMDEKGMREMVAEYDGEETED
Ga0208048_100028232F016803N/AVITLIGRIKAAWTFSRHQKWVDPLPWGKEEAIALNTFLRSEVGKKFKDALLNTVLMQNASAITDRNHLQYSAGFAMGQASLVKVIEVMADQESITGQDSDPDSVTNT
Ga0208048_10002827F005206N/AMKFTVDRSQAEVKPFPGPGEYTVVVSSAKDDGLDKNGNAVVTLKYKGSAGEIVSDRFALKETLMWRVQSLISATEANIDDGQEFDFSVSGAFHGFLSGFIGLSMVIVLEEEKYTDKNGAEQTTLRVRRMKKVPADNDTI
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Institute for Fundamental Biomedical Research
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