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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025283 Open in IMG/M |
| Scaffold ID | Ga0208048_1002081 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9914 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Malawi: Central Region | |||||||
| Coordinates | Lat. (o) | -13.5167 | Long. (o) | 34.7703 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007170 | Metagenome / Metatranscriptome | 356 | N |
| F024791 | Metagenome / Metatranscriptome | 204 | N |
| F058132 | Metagenome / Metatranscriptome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208048_10020813 | F007170 | GAGG | MAFEPAVIEQWIYETLTADAILMGMLAPDNKPNGFQMCIYNTIAPQIDPISRKQPVTPYVVFDRAGNAGQDEDALCGSRVFTYPTYRITVWDTASGAVSMAQSAAIMSRIDTLLDNQHVSSTTPRFYCRRESTAQTFGLESGGRTDFGVTAVYRFVTQQ |
| Ga0208048_10020814 | F024791 | AGGAG | MPFTRTSALIGENCVVTVAFGGYQDGTPSAFTAETYTCIARSVRFSTSVNTVDVSALCDLQNKAQATKANGSVEIEFLVDSVVGPIFFGKDGYYCQIVVTPGSLAAKTFVGVVTSTGLNVANEEALTESATITLGTNGVATAWS |
| Ga0208048_10020815 | F058132 | N/A | MALSTLKAIPKDEEKGLLTVDLSDIAGDGAELKFREPKAADLFPDSKELQSLRVAFAEFPEAMLYQIYLLGRCYVPDPTDASEDSPLRAFGNLARTSKTTFFRILGEFIAWYPTDDLQGRVKQAKNDLEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |