NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1005483

Scaffold Ga0208048_1005483


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1005483 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5334
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F016142Metagenome / Metatranscriptome249Y
F022857Metagenome212Y
F053230Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0208048_100548310F053230N/AMFDFILSSITSVVHDLLWTAAAALLAYTLNKIQSHFQRG
Ga0208048_100548313F016142N/AFRLADRPVDLDGELEDEQEQRSDFGEPSCSCGSFQRQLAHLPGLQAEIQGYKPWCIHLSWFKKYRELLGRRTEVRNACPAYAPDKCVAWWYTPPADATSDGRFMLLHTKHGAQAPLTHWRNYKPKEVFTQHDAWTLFDSMLESGYVPFPGVALPQLKTTQKADDLDRQTSTGSQG
Ga0208048_10054836F022857N/AMDPIAVPKLTVSFAVDLEIEYDSFGGKTPEELAETVQDELDDLLFEANSGIVGVITTLTAVESNV
Ga0208048_10054839F001018N/AMTQITTTKLKELNVIQLYEHYGALERSFPLLASDSQDLARAELESCLALRSEKVDRIYYALEAHEDAIERIKKEKVLILKAQKHHENQVTGLKRLLNYLKRVLPVDTNKITGRNYQFTLVRKKDLTVEVNSDPEYWSSDERLKFCVEEEITTTKRIVLRSLSGEILEERIEPSDKTNIVPNLDAIRNAHQTGQPLPSGVKVFQEYGIRSNRIYGKSSMDLAPSEYPGDLLPEDRSADEC
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