Basic Information | |
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Taxon OID | 3300025283 Open in IMG/M |
Scaffold ID | Ga0208048_1005483 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5334 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Malawi: Central Region | |||||||
Coordinates | Lat. (o) | -13.5167 | Long. (o) | 34.7703 | Alt. (m) | Depth (m) | 45 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001018 | Metagenome / Metatranscriptome | 804 | Y |
F016142 | Metagenome / Metatranscriptome | 249 | Y |
F022857 | Metagenome | 212 | Y |
F053230 | Metagenome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208048_100548310 | F053230 | N/A | MFDFILSSITSVVHDLLWTAAAALLAYTLNKIQSHFQRG |
Ga0208048_100548313 | F016142 | N/A | FRLADRPVDLDGELEDEQEQRSDFGEPSCSCGSFQRQLAHLPGLQAEIQGYKPWCIHLSWFKKYRELLGRRTEVRNACPAYAPDKCVAWWYTPPADATSDGRFMLLHTKHGAQAPLTHWRNYKPKEVFTQHDAWTLFDSMLESGYVPFPGVALPQLKTTQKADDLDRQTSTGSQG |
Ga0208048_10054836 | F022857 | N/A | MDPIAVPKLTVSFAVDLEIEYDSFGGKTPEELAETVQDELDDLLFEANSGIVGVITTLTAVESNV |
Ga0208048_10054839 | F001018 | N/A | MTQITTTKLKELNVIQLYEHYGALERSFPLLASDSQDLARAELESCLALRSEKVDRIYYALEAHEDAIERIKKEKVLILKAQKHHENQVTGLKRLLNYLKRVLPVDTNKITGRNYQFTLVRKKDLTVEVNSDPEYWSSDERLKFCVEEEITTTKRIVLRSLSGEILEERIEPSDKTNIVPNLDAIRNAHQTGQPLPSGVKVFQEYGIRSNRIYGKSSMDLAPSEYPGDLLPEDRSADEC |
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