NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1005812

Scaffold Ga0208048_1005812


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1005812 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5124
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074373Metagenome119Y
F074452Metagenome / Metatranscriptome119N
F080943Metagenome / Metatranscriptome114N
F083781Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208048_100581212F074452GAGGMTRLGTDPFTQEETREIQRAQDYWEMSYIDESNRVRYRISRVLVEEDILDLLYCHGHITADQQATTINQARRTDDNRSN
Ga0208048_100581213F080943AGGAGMITEATKERLRELEGQRITIEDELDHLQFTNNLARIVKLEHELDEIKDSIKKITASHTFEDISREELQKESRILQ
Ga0208048_100581214F083781GGAGGMSNRTINIAKFEKEAKDLATKAHGNNPSFTGGSLYVEMRDKDHAELLRADLEQYSNASWGDGDKNSAYGTVVKAYKLGDQNGRTEFVYDFMPGPGATDSDLYHSKMGAMAQEIPPEVETMLEMEAEIARGK
Ga0208048_10058128F074373GGAGLATEMTSNRTRWRTSPSSMPRKDIIDFEIGDNEETMQYFTDLAKKHKKQVLIQAEAMKKVDSIEKLDITEVHDIIKNAQEKAKSEEL
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