NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1005831

Scaffold Ga0208048_1005831


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1005831 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5111
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034152Metagenome / Metatranscriptome175Y
F083740Metagenome / Metatranscriptome112N
F102858Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208048_10058311F083740N/AMLTERTIFSLCEVLPNTTLQVRLADQIVDGETVKASTYRRYCLTPGSDLTGQPS
Ga0208048_10058313F034152N/AMRLGLGLGLGAEQAPGGAGGGADLPIMRRDLLREDDGFTLLEYDEGNPTYKIVITFGTFDSLMLEDNIIFLRREDDGKLIIQAN
Ga0208048_10058318F102858N/AMKLTDEQLSEALSVSEEHPVLKAVAQVIDDAIRDEVYHAITPSLSAEDRAYNAGRAAAIKDLSAQFAALRGGKELTSGQL
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