Scaffold Ga0208048_1037816

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208048_1037816

Scaffold Ga0208048_1037816

Overview

Basic Information
Taxon OID	3300025283 Open in IMG/M
Scaffold ID	Ga0208048_1037816 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1254
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Malawi: Central Region
Coordinates	Lat. (^o)	-13.5167	Long. (^o)	34.7703	Alt. (m)		Depth (m)	45
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F076096	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_10378161	F076096	AGG	MIWYDKEWENPLYWFDKLLTYSDHATLRAFERDIPFIDFLPVHSKFLYHTLKTNIWSLTFETTVNWKTIHIAINTHGVVMTVFPKVISRADEFQYKYKQYLGAFKPPVDYLPTITAESFVDNFEVAV
Ga0208048_10378162	F006220	N/A	MKKFKKFVEELALASGTEMMRASQMRPTTFKDKSKYSRKQKHKNRQDKNSGDSF
Ga0208048_10378164	F007310	N/A	IYIIWYISAMRTVLWNETERWFNHHHYELLIEDITGFNLQENLCSESVKYMAKRLKDTPYHRAFRNKYSIYQDEYKTLVEKFNNQAENNGSIVVER

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.