NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1049355

Scaffold Ga0208048_1049355


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1049355 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1023
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F009005Metagenome / Metatranscriptome324Y
F093404Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208048_10493551F000785N/AFGKFGNLLYICTYDITILYPTNIFMRVSNKKLGMKFDCNRLWNWAHEKLGASKCEAIAFYWKWGRDAELGYYDWKNTIWINLAECKRMISVQKTILHEWTHAQQSYRWWKHYDLNYGYKKNPYEIQARENEKLVKRAYKRRTK
Ga0208048_10493552F093404N/AVHTNEEQNKPAPGQIAWNKAAHSTCELFENESGGYYPVCQRIETPGLIRSEYTPIGSRLQYPTKWGRKRAAIHLLEFKISDALRQITDAQQELEKLRKCLDEVHLWDEDSKD
Ga0208048_10493553F009005N/AMLSEQQMIETATLLGQDEELLSYAKQIQRQLSADGDTAIWVDCLEMAYNELILK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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