Scaffold Ga0208315_1013377

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208315_1013377

Scaffold Ga0208315_1013377

Overview

Basic Information
Taxon OID	3300025286 Open in IMG/M
Scaffold ID	Ga0208315_1013377 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2773
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.09	Long. (^o)	11.46	Alt. (m)		Depth (m)	1200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024572	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10133773	F024572	N/A	MPVTAVPVPLRDRLMTEFRGFLCRQMDFVPFVHQAAWWATTDGYELTGVTVPEGTPHAVYARSPDGTCDWFAQTPRTQGRARVVAELGAYKSGKSAGAGLWAAAFGSVPHARVYLVGNEYDMCTPEFEYLLEALCSERGLNQTPTSLQNRPKDGRLWLELENGARFEARSWERAESLKGKEVDAYIYCEAYQLPGIECYTSVSQNLRVRKGYAVFPTTPDRPWVGVFHEHGHDHPDFPDWVCKCAIPATVNPYSFDQTAMDRDRTLLTREKFSIAYFGKLGDFVGRVYNYQRGDRQIAVESHPTLCATDPVTRESLRPDPDWTVVLGADTGTYCAAVVMAVSPAGQAFVLDEVTNYRYVAHTPELDPSGSILRWVREVQAMARRWKTRPVAWVDANSQFKAECAHHGLHLMANHRGREVRTEAARQYFQHGQIWLAPWLQILPYELEHAQWPETTSSAGKYERLKASDHALDCIEHILSRHPRGRVAEPPPSLPALYNIQPMGEPLRRTRRSAPDSHLGAE

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