NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207903_1035300

Scaffold Ga0207903_1035300


Overview

Basic Information
Taxon OID3300025287 Open in IMG/M
Scaffold IDGa0207903_1035300 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)17.4274Long. (o)-59.8286Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014555Metagenome262Y
F060347Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0207903_10353001F060347AGGAMDKKRKVYAPFSQTSEAGVAQTPVEGYIDVNQMIYPTVSTGTVNENGTWVGVKASDANFIDITKHVAVANGGETLSPDTGTVNFIDMTGFNDIQLAVKPTNGGNYAIEAVMGPDTNRYANLSPVAAGAGLRGNENTTGKDCDLLFRDTAESFTADVWNILSIRNVVANIKLLQFKITNNSGGESTMEVGIMRIV
Ga0207903_10353002F014555N/AATDSATNGAATFAMQLTGDGLTEQQTLTIGSQGVDGTPASNGMTNLPFALDVAIPVTASNQVAIAVGMDVDVGSAQAAVTLVFA
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