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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025288 Open in IMG/M |
| Scaffold ID | Ga0210044_10022006 Open in IMG/M |
| Source Dataset Name | Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6377 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → environmental samples → uncultured archaeal virus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Utah | |||||||
| Coordinates | Lat. (o) | 38.9383 | Long. (o) | -110.1342 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050143 | Metagenome / Metatranscriptome | 145 | N |
| F068439 | Metagenome / Metatranscriptome | 124 | N |
| F083687 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210044_1002200610 | F068439 | N/A | MKSKHESVDTKSTRDKKKICEACQKRETEENDSIIKNVEEIEIYDRKKTGKNYSYHVFFYTIENECFFEYYSYDNIKRYNKERTDFLSLLTDENKKKVYDFEYKMHEKYPKYLYKMKNKKVTYPEYKNIKEYRISENYTVMFFTIGQHAIFQYFEDDGLIVYNKVDRSCVLHWLSGEETERLFNFEDEIKEEYAKYIF |
| Ga0210044_100220066 | F050143 | N/A | MAKCDWMTETDVKDAMVRGISNAGAAHTFGVNYPRQDPIQSAISAIQKGIWEKNFRDSIGKWEKKLALVTIEEWKAATIAAASMYAEKASTIGAEEWGKYYDKAKSVIESAATEYVKSDKKKENLIKFWTDMQKLKNL |
| Ga0210044_100220067 | F083687 | N/A | MEKFKKFKQEYKKDFVIPFLSTTKEKDIFIYIFRLLREKINKGIFPEISNNEIIYSKSDLKNLISKEIIFFMKQKKGWIITINPTYSTKNVECPWCGAKFNEKIYFRLKRMRCPSCMYGMNGSTVAEKFETDDIFLPTKTENINKEENKTEIEKVTTDIKSIPTDIERIMQIARQEIIPFQTNKADKMNAISTLNRIASEKNKSLALIAQKEILANFSDDCIILLREYFFVGDKFFSATKYMNMRLSEVVKDPRFIGNTSRKSMLLAEMKYACEQLCGNAEIRSVTEIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |