NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210044_10150585

Scaffold Ga0210044_10150585


Overview

Basic Information
Taxon OID3300025288 Open in IMG/M
Scaffold IDGa0210044_10150585 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1447
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014357Metagenome / Metatranscriptome263Y
F019951Metagenome / Metatranscriptome226N
F026802Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0210044_101505852F026802N/AMYYYVPFSRNLTQGNTEEIAAADPGHVVGVFLRFKSGVQGFHPLRGQISISDIGTTKEYLLKNGIYAIFQRGTDGFMLNKWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYS
Ga0210044_101505853F019951N/AMTILFKAFRIDVSPNNVKCEAYSKLHVQKGQKIILHAIQIAPGASTTDEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIKFDAVAVEGQTFVTKAWGPHTRTINGVYMYEITS
Ga0210044_101505854F014357N/AIVYDIYDAGDMHNTMENGKDSKELTFLMYGQPAADVNTATDTQITKKNNPSEFCDFPFRGGVAAKRKIDLYGVVYSSRGADDGAITANCIHTKYLKLMKGRNVLFDSMRMGLPAQGSDVLIGGTFSAENGYDIGGEYSDLYQKDVLMFDQPIRFANGEELDTYWTTAVATTPGTFAASELEIAYILKETQE
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