NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210044_10275560

Scaffold Ga0210044_10275560


Overview

Basic Information
Taxon OID3300025288 Open in IMG/M
Scaffold IDGa0210044_10275560 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)915
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037574Metagenome / Metatranscriptome167N
F060596Metagenome / Metatranscriptome132N
F086603Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210044_102755601F060596N/AMENEEASVGAIPIPDGNVAKKKMAKNRTMVLLDRKVVDRLCCCKKRIGNTYNSVISNLLDKYENGQ
Ga0210044_102755603F037574N/AMTGIFADEVSEYTTITISKDTAKKLKEFFLGKETYNYVITFLLDYYDGKTYRF
Ga0210044_102755604F086603N/AMEKHTDFEKFKREYKKEFDIPALSAKEKDIFMYLFLLLRKKMSKGIFPELHNSEILFSKSDLKALILKNIVIFQNYKRG
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