Basic Information | |
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Taxon OID | 3300025289 Open in IMG/M |
Scaffold ID | Ga0209002_10071149 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2352 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Nitrospirae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Rifle, Colorado, United States | |||||||
Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022846 | Metagenome | 212 | Y |
F047595 | Metagenome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209002_100711492 | F047595 | AGGAG | MDFDIGSNQYRNATNGIEIDGMAQFSFEHNRRYDEMMLRGLIFDQRGSLVAQIAENSLCMNIQGEFEMQSEYPVVKLLRRETEDVLLEVKFLDKDRVQIHKARLYSGKGTPFEVTPTLWKLKDDTHSGGNVDCDGKPVSLK |
Ga0209002_100711493 | F022846 | GAGG | MPIAAPDELGRELSDLAFGIIEQNWLAEHIGKAVDVKGLDPMQASAAEWELTYLILFAITSGCGTCAATDRDRTTAALKAFHSTFLKQIGEQVGQDIANAHEKNLVPRYRLYGQTLEGEDTTHPYKTRYQRLGEAAAIQLLGKPIEDPQAADIFRETIKVIFTEVREAAIKVMQHPQVAPVQGDA |
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