NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209002_10228611

Scaffold Ga0209002_10228611


Overview

Basic Information
Taxon OID3300025289 Open in IMG/M
Scaffold IDGa0209002_10228611 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 16ft 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1131
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006542Metagenome / Metatranscriptome370Y
F039568Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209002_102286112F039568N/AMAQELSPAAVNSPSFVTFAKCFCINPVYINPIYGGGHYKKRKGWVLIDLATRAETNFKTLRDARHHLMGLYMETTPKIVPAAGL
Ga0209002_102286113F006542AGGAGGMDETELSELMTAPGFFRFLGQQAKLDAEEVKRIYMLGRPWGLWPPDLDVSREAAEAGVDVFTYLAALQPLLDMDTREKEAQLTAYEVTLTGGEAAQLIPAVCAQVEKVAALARADEATICRVFHALYAYRQRVGRLSIQKVGESSKHKVEQDQAVAIEKLQRALAAEIEQRKNLP
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