NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208181_1044896

Scaffold Ga0208181_1044896


Overview

Basic Information
Taxon OID3300025300 Open in IMG/M
Scaffold IDGa0208181_1044896 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)936
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)5.24Alt. (m)Depth (m)2820
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021207Metagenome220Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208181_10448962F021207GAGGMSKRFKQVNIQHFATLVQEVDISKYSQEEYVDIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSATKEEVMELIKEGRVIWNKDVI
Ga0208181_10448963F105326GGAGMEQRRNLTPKEHWELHQGLWYMLGCDMELKHKDRTKIIYVDNKSKRQYTYSALGFIKEKKYESNXRRYGVMDRHR

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