Basic Information | |
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Taxon OID | 3300025308 Open in IMG/M |
Scaffold ID | Ga0209211_10024842 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Rifle, Colorado, USA - Groundwater A2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6505 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Rifle, Colorado, United States | |||||||
Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F056711 | Metagenome / Metatranscriptome | 137 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209211_100248426 | F056711 | AGGA | MLAAAAFALAILAGGCAKDKSPPRLQPAKKGIAGAEKKAAPKPRAKLFTGTIEDLDEAAGTLTLKGPKGEMSFQAREKVKEQLGELELGDKVIVKHDGKTALSIVKPRTSKTALALYRNEEPGKSHPNFSNQ |
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