NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209172_10000114

Scaffold Ga0209172_10000114


Overview

Basic Information
Taxon OID3300025310 Open in IMG/M
Scaffold IDGa0209172_10000114 Open in IMG/M
Source Dataset NameHot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)240663
Total Scaffold Genes246 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)215 (87.40%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)60.1987Long. (o)-125.5127Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000587Metagenome / Metatranscriptome1007Y
F005457Metagenome / Metatranscriptome400Y
F019744Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0209172_1000011416F019744GAGGMSATHPPDGFWSDTYNGHNIAILNHGGGWLVYIDHVLQPRLLFDSADAAVRWLQRKVDRSGARTRELVRSL
Ga0209172_10000114197F005457N/AMSAELSYKTHILIGVRANGVMAVIADWPHLPSLAEVHEQIDGARGDYVAFALCTPTSIVPAGGDTEAGAGGRTPGSRRRA
Ga0209172_1000011440F000587GGAGMKTIVSALIALSVLAGIAAPVAAADAKTFYEQMERSRY
Ga0209172_1000011442F000587AGGAGMKTIVSALIALSVLAGIAAPVAAADAKTFFEQQERARY
Ga0209172_1000011443F000587AGGAGMKSIISALIALSVLAGIAAPVAAADAKTFFEQQERARY
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