Scaffold Ga0209343_10292704

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209343_10292704

Scaffold Ga0209343_10292704

Overview

Basic Information
Taxon OID	3300025311 Open in IMG/M
Scaffold ID	Ga0209343_10292704 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1133
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074681	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209343_102927041	F074681	AGG	MLSRIAPKFSRLFRMIFKQKAAPHEIGMSFVDMIVKSREDKPETRSVLASLSEKDRERVQFETMLLQGFVIEYVTSELFRNRPEKQGILTAYRGALDSLAEKDPVWRAFDAELRLRLLRYTEAVIAPSLDAMLTRLGDAFADACGHPGDRTLSTLGILEFEIQYVATCTLCCDYVGAFG

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