Basic Information | |
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Taxon OID | 3300025312 Open in IMG/M |
Scaffold ID | Ga0209321_10000781 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21152 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Rifle, Colorado, United States | |||||||
Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007968 | Metagenome / Metatranscriptome | 341 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209321_100007816 | F007968 | AGG | LRYILTVDFEEDADIDSFLRFVQYHSKRLKCPGKDVFIRLAHEWEKQLVSNGESTGPVGFKKEKKKALKESTD |
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