Scaffold Ga0207697_10023305

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207697_10023305

Scaffold Ga0207697_10023305

Overview

Basic Information
Taxon OID	3300025315 Open in IMG/M
Scaffold ID	Ga0207697_10023305 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2535
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013682	Metagenome / Metatranscriptome	269	Y
F029890	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207697_100233051	F013682	GGA	VLSRFVSKILIIAFLVAGCGEVSHALDFGGLVVYVGDRSDPGDFDPYFNQPKMYRQPRYYESTSKKRKGNKVFKTTKVKDQYG
Ga0207697_100233054	F029890	N/A	MKKLLAIIALAILTGMVARAAQVGDTVFGFVSVENRVPLAVSNDPQEVFHIVLDDGIWLVSGQCNFLSLNTPAGTMFTASNIAVGTISFNPTQTAQITAEQVARLGNIIRNSALVPRTVDVPDGTNIYLVAGSFNPNPNVSAWGFMTAVKIRNHVD

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