NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207656_10029293

Scaffold Ga0207656_10029293


Overview

Basic Information
Taxon OID3300025321 Open in IMG/M
Scaffold IDGa0207656_10029293 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2266
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036344Metagenome / Metatranscriptome170Y
F064075Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0207656_100292932F036344GGAGVSEQMFLIEARRMRRGDRPAGIARFIVTGGSRYAALSKLRVYYDTSDVDSLTATPVSGIIPIAGALVHDMRRATPESEASQTPEKPDAGGDDDEPWKRSA
Ga0207656_100292933F064075GGAMRTHPLVPVLAFAVLSATTASAQASTQSGQSAAQSTPCHRCLNGFRFVPSSVVDEPFTNTSFENATGGGIALNLQVPVRNLAGDTISTLNGNIGFFLLDFEYQKSITKWLALRAGVTGIGRLGTSLEALVASGISAAMGGYIGATVPVWSKPNFLISAVADLKNNKQWDVDPYSFAKDVVDSGYNDTTKAVLLSSERVNRWSFGLRGAWAVKPWLGFTANIEPGGADGEVSGNKSLSTFGALAGFDLQKLWDVPISTTLAYRVRTGSGKSGNISGGYRSAQLGVYYNALREVLIGGDFFYSTIRVSGGDIPDLNAIQFRLVTHIDF
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