NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209640_10026868

Scaffold Ga0209640_10026868


Overview

Basic Information
Taxon OID3300025324 Open in IMG/M
Scaffold IDGa0209640_10026868 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5015
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F036167Metagenome / Metatranscriptome170N
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209640_100268685F047595GGAGMDFDIGSNQYRNATNGIEIDGMAQLSFEHNRRYNEMMLRGLIFDQRGSLVAQIAENSLVTNLQGEFEMQSEYPVVKLLRRETEDVLLEVKFLDKDRVQIHKARLYTGKGKPFEITPTLWKLKDETHSGENVDCDGKPVSLK
Ga0209640_100268686F022846GAGGMSIAAPDELGRELSDLAFGIIEQNWLAEHIGKAVDVKSLDPMQASAAEWELTYLILFAITSGCGTCAATDRDRTTAALKAFHAAFLKQIGEQVGQDIVDAHEKNLVPRYRLYSQTLDGEDTTHPYKTRYQRLGEAAAIQILGKPIEDPQTADIFRETIKVIFTEVREAVIKVMRHQPAAPVQGEA
Ga0209640_100268687F036167AGGAGGMRRFTITDIMEGNGQPHPAFTRTATYPVLDILLPGSGNLPGFLVADDQGRFHLIRMDHCRMGKIEAF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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