Scaffold Ga0209640_10513183

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209640_10513183

Scaffold Ga0209640_10513183

Overview

Basic Information
Taxon OID	3300025324 Open in IMG/M
Scaffold ID	Ga0209640_10513183 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	976
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013066	Metagenome	274	Y
F027435	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209640_105131831	F027435	GGAG	MKLRVGNGCWHAGHVQVAAYCREAGLFTQEGIDVDVVTAKIYAKGLESSRPDGERYDEVGTVLRDMIAFNIDIIPDVHVRTPFAERALGNDELRIIGGWRNWFPASLVTAPGVKSIKELKGKRIGDWYRG
Ga0209640_105131832	F013066	AGG	VARNPEIIKRYWKASIRGYQFIRIAPENYPFLRFVEAKLRLTNPDEAERMRDLWSMELMEGAFFPMDGQLSAEGVWRILEEHQDAGVLAKSISRADVEQMIQQDLAREAWVEISQTDEIKRNLERLQPVIERHGY

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