NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209341_11149291

Scaffold Ga0209341_11149291


Overview

Basic Information
Taxon OID3300025325 Open in IMG/M
Scaffold IDGa0209341_11149291 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097607Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209341_111492911F097607N/APKQDMKTKKLLLVLLLACLLGCYAGSVKPLLNRPEFKAENQPIRTLRVLLITDPSYRKDEIEKFVSKCSRLVEIQVGIRLEILDWYQIKWEDELDDIIKMEIRIAGDTWSKRDKFDIALAFVHFVHSVEGGKLPLGATDTFFWRYIFVRELDPYILLHELFHAFLLHRGHSKEWVMRGARPAYG

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