Scaffold Ga0209342_10306474

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209342_10306474

Scaffold Ga0209342_10306474

Overview

Basic Information
Taxon OID	3300025326 Open in IMG/M
Scaffold ID	Ga0209342_10306474 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1378
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013593	Metagenome / Metatranscriptome	270	Y
F041659	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209342_103064741	F041659	GGAGG	MSSDKHFLDEQGMTELARKSIEVLRQEGASPMELRRLEALLKEGNVGEAFIMSSLLRTIIGEISPEASQKKLLLVYRGLEDICQSLVELSRNLFDIDAWQHYRDSGFDSFESYCEGALGIPATKIQGLMLVKDQRLPRPKKAGPGELFAWL
Ga0209342_103064742	F013593	GGA	MDINYSLETLTGKHGGLLEVVESIISDGRLILILTDEDVLQRRDAPLKGVFYRLILPLAPATMNVKGEAFGLIRESLKFTEDGVSLEKLAREIGR

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