NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209751_10608049

Scaffold Ga0209751_10608049


Overview

Basic Information
Taxon OID3300025327 Open in IMG/M
Scaffold IDGa0209751_10608049 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082080Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209751_106080491F082080N/AEAARLYRLEDIGVCLWGYWGVERPGQPKLASMLAKETLQFSTDSSSRELQTSLLHRDIGKGRILLSLPSLKLVSPNLAEVTEKNEGPVLVAVEGDDYETWTYGVWLYRLVRRIYPARGKGGKPGQVSWKIVAAWLQEEPALLGQFIDLLVDRKLRTWEQEQKGVAIQDSDRKWARHEATQEIKRGLARAGLKISDLRKNLRLHKGR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.