NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208615_101205

Scaffold Ga0208615_101205


Overview

Basic Information
Taxon OID3300025330 Open in IMG/M
Scaffold IDGa0208615_101205 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023784Metagenome / Metatranscriptome208N
F025270Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0208615_1012051F023784N/AMNMNQLIAKLTSFSQEGRRISQDNASRRILKVKELLETRNLCVIDRPSLRIRASKEDDPPAILSIAEEKAIARATIRLLELRSKGESRIHELLESLDTEKTSGDLANRAILEDIFLVIKDVRRILPNKCLGGKHYVNFQIEPVGTTEEENEILKRALEKNTFLSKEEREYLFSIVKVENVDAKYSTLKTPKYLLPRPEITPAVPSTSASHNIFRKENDKIEIHINLANEVKGKRFKRKSLRKAKRKV
Ga0208615_1012052F025270N/ALRSLRVSQATKVSKHKLKRQWQKVAAETLAKLNNVKTNELNTSEHNIAVFNEIFTKVQELRRLDPGREINQYALAQAVITKYNCSLCLPTDDSDYEYEPVNS
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