NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208252_100218

Scaffold Ga0208252_100218


Overview

Basic Information
Taxon OID3300025337 Open in IMG/M
Scaffold IDGa0208252_100218 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8756
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032253Metagenome / Metatranscriptome180N
F053787Metagenome / Metatranscriptome140N
F067402Metagenome / Metatranscriptome125N
F075719Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208252_1002181F032253N/AMSQAIETTNNDPKVIVKNLKESIVEGLPFLALLMKRLMVAINKLPHLVQIVIAPIAEQAQTKTAEMILQYESALLQNETLGKEDLITPIRFDVDSSNPAIISPEIRKIIATSLNELQATLYMIDMADQIISMISQLDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILL
Ga0208252_1002184F053787N/AMSEQDEIEIEIVEEQSSQSDRVKLEKSIRKDIFLAAKMAHHIMKNVEYLNKQGHNSASECANQTYLKVMDMATQVESYFSDKRKAKVVTSNQDASEVNKVDKQALEKRIKENMKESLRLLNALLLALKTNKEKVCAYGDPDPSFGLINETLMATVRLSTNLYEAFQLEEVREKDLSLSEIQQIDSIPIEDSTGELTSDSINQQSQEH
Ga0208252_1002187F075719AGGMTLKDLVVEPRGGTSVVLDMTIKDLVKESKLDTFDVEESHKDTLDPDMSLKDLACDSVGNYPRVLIPRTDLMSELSHNRKVCDQIMESKHFKGKHPHKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTSRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNNNRKFGTVIQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV
Ga0208252_1002189F067402N/AMQMFYFLNTCRLSIIFLLSSKRDDFSRLRIFNVIGSFLQQNFLRRVKSKMDTSFVANVHEVVFATFLATYCSPALNLLISKFFKAHMAIYREGNVSYNTVMIVNTILMDFFVKYQRMFSRNIGMEFVEHVLSRLIGYEGFWQLINHLNIHIFYLTYRPQILVILSDALLGTYGSRNFNRISNKIPPYCIGEVECEEFRTNRSKFIF
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