NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208252_101805

Scaffold Ga0208252_101805


Overview

Basic Information
Taxon OID3300025337 Open in IMG/M
Scaffold IDGa0208252_101805 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F031767Metagenome / Metatranscriptome181N
F055458Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208252_1018052F031767GGAMNNNPINQKKIIVKRLERKPRQNYIKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVPTNKNS
Ga0208252_1018053F019600N/AMYAPDTDTSKLETGYNLEKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKSTSLVSSSDIREMKEIIEKLANWELNEQ
Ga0208252_1018057F055458N/AATFIKGSMCEILALISAQQKEMIKELEKLPLSKRILVENEVDEATDKLIELLTELQLTFVIETETEDS
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