NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208252_104168

Scaffold Ga0208252_104168


Overview

Basic Information
Taxon OID3300025337 Open in IMG/M
Scaffold IDGa0208252_104168 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1171
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000784Metagenome / Metatranscriptome891Y
F000862Metagenome / Metatranscriptome856Y

Sequences

Protein IDFamilyRBSSequence
Ga0208252_1041681F000784N/AMNTAYAVPDPEPKLLDSNFVEPSKLQLLFRPSGKYAASTHYIHVRVPFNFSRLTLMPSVIFDRYHRYIEVWPEPSRTQVEEVAELSRSVLQDKYNDFKNQLDALPQYEVVTRDKRFLDLVSLGMSTAALTLSTFNTVKISHLETQIVNNNKRLDHLVDITALHEKHFKAVDQKIDDMADLLV
Ga0208252_1041682F000862N/AAQREADTFNQNDEINSDGEIFLINETLRKPLMHIANKLLGRQRLSFEQLTTPEQNLWSLFEKSDIFEFLTGQKDTVPQFENFLTFGAAPKVNINIQRIAQNLHPILPTQNQVPIQRAFSDPTQVTHFLRERKAKIDYKALHLGQQIQNAAKEVKQKCKQMKKSVRKSAKATVTKLAPGAFSPKQETPASAPASPRPSSSSSWTFWPSK
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