Scaffold Ga0208138_100998

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208138_100998

Scaffold Ga0208138_100998

Overview

Basic Information
Taxon OID	3300025343 Open in IMG/M
Scaffold ID	Ga0208138_100998 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8343
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV1	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Rauer Lake, Antarctica
Coordinates	Lat. (^o)	-68.8244	Long. (^o)	77.8344	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011984	Metagenome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208138_1009989	F011984	GGAG	MRPIICDCCQIRIDERWAGPALVVKVHNGVDTDVAGDHCVDCAGDISDAIRSVIDDNDRSDSNE

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