NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208138_104269

Scaffold Ga0208138_104269


Overview

Basic Information
Taxon OID3300025343 Open in IMG/M
Scaffold IDGa0208138_104269 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1114
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameRauer Lake, Antarctica
CoordinatesLat. (o)-68.8244Long. (o)77.8344Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100063Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208138_1042692F100063GAGMSETCEVCGQFTGQTESFDLWIRGLDRRGEGDRIEMDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNDTPDGELRYVVMIRDEIETDSDANTVQLHPITGNYLPESIDGYVFGKITTESTEP

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