NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209670_105942

Scaffold Ga0209670_105942


Overview

Basic Information
Taxon OID3300025349 Open in IMG/M
Scaffold IDGa0209670_105942 Open in IMG/M
Source Dataset NameThermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2438
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008426Metagenome / Metatranscriptome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0209670_1059422F008426GGAGGMSGTQYLSPLLQDPAWQALSRQLSVEARIAIFYLDELWKDERFQRDWTRLKEAYFEAQREAIAELRELFRKDFRTLTNAARKRAEALFLRGANEHASCLVRQLKEYVPDLIRDATWSYLFGRACEADREAEDEDSNRRKIYAISTENIYASRDPENFRLTEWELVRGFFSGELGELRLGIYYHDRRDRAHESFVAFSSKTPFFVPNTCAPLPSESKQDYLKRIKRDLEHELKLLAEPCSHRQPLILPRFLNKLKQLGYEFHNPRNAIPAILALAEDYYEKCDAERRNQVSNRSDATLCFYAKVVYQHKVKGLTHWKEIAGEIMPEGEDLEDWTDRVRKALPVAYELLGLPCEQKGENSENHP
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