Scaffold Ga0208135_107060

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208135_107060

Scaffold Ga0208135_107060

Overview

Basic Information
Taxon OID	3300025351 Open in IMG/M
Scaffold ID	Ga0208135_107060 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF5 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1268
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Deep Lake, Antarctica
Coordinates	Lat. (^o)	-68.5627	Long. (^o)	78.1882	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013259	Metagenome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208135_1070601	F013259	GGA	MILVGAMGTIYKDYTDKPLADLNLDYHKIKNLTHKLNEHSIRYASALIKTRYALQYSTSNNSQGLDLGATAHNPPDPHYFL

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