NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207995_113398

Scaffold Ga0207995_113398


Overview

Basic Information
Taxon OID3300025352 Open in IMG/M
Scaffold IDGa0207995_113398 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 022AM (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Nanohaloarchaea → Candidatus Nanosalinarum → unclassified Candidatus Nanosalinarum → Candidatus Nanosalinarum sp. J07AB56(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameDeep Lake, Antarctica
CoordinatesLat. (o)-68.5627Long. (o)78.1882Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100063Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0207995_1133982F100063GAGMSETCEVCGQFTGRTASFDLWIRGLDRRGEGDRIEIDVSGVSVGECCGLAVLQGPDETRVDRSYQRYLNGTSDGELRYVVMIRDEIETDSDTTQFRHPITGNCLPESIDDYVWRILEPDN
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