NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1000023

Scaffold Ga0208383_1000023


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1000023 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37363
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (8.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058734Metagenome / Metatranscriptome134Y
F063402Metagenome / Metatranscriptome129Y
F091108Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208383_100002338F091108AGGMNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMADLSMPGADLPPEGYHQLNTLEEAKNFLHKYVAYIREVWDKQVLAQRK
Ga0208383_100002340F058734N/AMQITIIENVKELTAAEQKALYTEGADIYTGIYYLLADADLFTVHGKDIVPVVPALRSLSSTSNIKWVITNFRGNKVAFGSATV
Ga0208383_100002342F063402AGAAGMTTQYDNVIVRDIQTRTLGDESVEQRLNAVRRRINTTKYEILGFINRSSQIVLAPRFYNVRDAKGRFAKVFKQPYKAKNHR
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