NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1000027

Scaffold Ga0208383_1000027


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1000027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36473
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (78.79%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015431Metagenome254Y
F034803Metagenome173Y
F054028Metagenome140Y
F066380Metagenome126N
F094772Metagenome105N
F102001Metagenome102N
F102392Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208383_100002712F015431AGGMAVGRKEARDTIATFIKPPQVDGINQVFTSFPKRINFEVNALPSQRNRCAAVVFIESETETRIGLGGYTAAGVATGIKKVDYSVAIQLFHHSLENNAEDAMADFDNVIDNLKNRLRSDHQFGDKSGVLVWQAAEPVINTSYGEPMSSNGTATETWAVVRFDVTQVINA
Ga0208383_100002721F102001AGAAGGMELPIDGVLKEMRDIIGVQAQEIALLKATLTALQNPPAPTYTTAVTDKPDVIGTQGIKP
Ga0208383_100002736F094772GGAGMITPQQVEKRLFDLSKEMDEAHADLVGAEQEFHSASAHYEVAMAKARMKNSHTDLKMTATMREDQALIENETMHLRLAIAEASVKACRANVNRIRTQVDITRSISSSIKATLEL
Ga0208383_100002739F066380GGAMKTILQEAETAFITVHESFCLEKDLKKCHLNHYDLIKRLQDYEKGIEARIRSEIAGDLEQARDFLVLTKDPEEGTAAMWIKFAFDKAVGFLKEEK
Ga0208383_100002743F054028GGAGGMMKLVPTNEKITIKWFAVLSDGSKMRNNKGFIHNAWDVECSCGWESRTGGAIKAAVVKDVDKHKLFVHNYEFVVA
Ga0208383_100002748F102392AGGMKVICKENHWKINGAKLVLDTPEGQEAVEQMVKAIQARVRLAIYEEICALDLTTRRKQIVKNGLENSLLQVQDLCAQIALGQK
Ga0208383_100002765F034803GGAGMPSQAISQTPDPLNITVRQNQEWAITFSYTDSTGTLISLAGYTPILQFRTSALAKTTALSLTVGNGITFNPNSLPQVQVDTTINCAPGKYEWDLKLTPSSGASIFLGVGTVQVNAEVSR

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