Scaffold Ga0208383

Basic Information
Taxon OID	3300025357 Open in IMG/M
Scaffold ID	Ga0208383_1000027 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025357 Open in IMG/M

Scaffold ID

Ga0208383_1000027 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36473
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (78.79%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36473

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (78.79%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015431	Metagenome	254	Y
F034803	Metagenome	173	Y
F054028	Metagenome	140	Y
F066380	Metagenome	126	N
F094772	Metagenome	105	N
F102001	Metagenome	102	N
F102392	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_100002712	F015431	AGG	MAVGRKEARDTIATFIKPPQVDGINQVFTSFPKRINFEVNALPSQRNRCAAVVFIESETETRIGLGGYTAAGVATGIKKVDYSVAIQLFHHSLENNAEDAMADFDNVIDNLKNRLRSDHQFGDKSGVLVWQAAEPVINTSYGEPMSSNGTATETWAVVRFDVTQVINA
Ga0208383_100002721	F102001	AGAAGG	MELPIDGVLKEMRDIIGVQAQEIALLKATLTALQNPPAPTYTTAVTDKPDVIGTQGIKP
Ga0208383_100002736	F094772	GGAG	MITPQQVEKRLFDLSKEMDEAHADLVGAEQEFHSASAHYEVAMAKARMKNSHTDLKMTATMREDQALIENETMHLRLAIAEASVKACRANVNRIRTQVDITRSISSSIKATLEL
Ga0208383_100002739	F066380	GGA	MKTILQEAETAFITVHESFCLEKDLKKCHLNHYDLIKRLQDYEKGIEARIRSEIAGDLEQARDFLVLTKDPEEGTAAMWIKFAFDKAVGFLKEEK
Ga0208383_100002743	F054028	GGAGG	MMKLVPTNEKITIKWFAVLSDGSKMRNNKGFIHNAWDVECSCGWESRTGGAIKAAVVKDVDKHKLFVHNYEFVVA
Ga0208383_100002748	F102392	AGG	MKVICKENHWKINGAKLVLDTPEGQEAVEQMVKAIQARVRLAIYEEICALDLTTRRKQIVKNGLENSLLQVQDLCAQIALGQK
Ga0208383_100002765	F034803	GGAG	MPSQAISQTPDPLNITVRQNQEWAITFSYTDSTGTLISLAGYTPILQFRTSALAKTTALSLTVGNGITFNPNSLPQVQVDTTINCAPGKYEWDLKLTPSSGASIFLGVGTVQVNAEVSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208383_1000027

Overview

Ecosystem & Geography

Associated Families

Sequences