Basic Information | |
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Taxon OID | 3300025357 Open in IMG/M |
Scaffold ID | Ga0208383_1000027 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36473 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (78.79%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015431 | Metagenome | 254 | Y |
F034803 | Metagenome | 173 | Y |
F054028 | Metagenome | 140 | Y |
F066380 | Metagenome | 126 | N |
F094772 | Metagenome | 105 | N |
F102001 | Metagenome | 102 | N |
F102392 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208383_100002712 | F015431 | AGG | MAVGRKEARDTIATFIKPPQVDGINQVFTSFPKRINFEVNALPSQRNRCAAVVFIESETETRIGLGGYTAAGVATGIKKVDYSVAIQLFHHSLENNAEDAMADFDNVIDNLKNRLRSDHQFGDKSGVLVWQAAEPVINTSYGEPMSSNGTATETWAVVRFDVTQVINA |
Ga0208383_100002721 | F102001 | AGAAGG | MELPIDGVLKEMRDIIGVQAQEIALLKATLTALQNPPAPTYTTAVTDKPDVIGTQGIKP |
Ga0208383_100002736 | F094772 | GGAG | MITPQQVEKRLFDLSKEMDEAHADLVGAEQEFHSASAHYEVAMAKARMKNSHTDLKMTATMREDQALIENETMHLRLAIAEASVKACRANVNRIRTQVDITRSISSSIKATLEL |
Ga0208383_100002739 | F066380 | GGA | MKTILQEAETAFITVHESFCLEKDLKKCHLNHYDLIKRLQDYEKGIEARIRSEIAGDLEQARDFLVLTKDPEEGTAAMWIKFAFDKAVGFLKEEK |
Ga0208383_100002743 | F054028 | GGAGG | MMKLVPTNEKITIKWFAVLSDGSKMRNNKGFIHNAWDVECSCGWESRTGGAIKAAVVKDVDKHKLFVHNYEFVVA |
Ga0208383_100002748 | F102392 | AGG | MKVICKENHWKINGAKLVLDTPEGQEAVEQMVKAIQARVRLAIYEEICALDLTTRRKQIVKNGLENSLLQVQDLCAQIALGQK |
Ga0208383_100002765 | F034803 | GGAG | MPSQAISQTPDPLNITVRQNQEWAITFSYTDSTGTLISLAGYTPILQFRTSALAKTTALSLTVGNGITFNPNSLPQVQVDTTINCAPGKYEWDLKLTPSSGASIFLGVGTVQVNAEVSR |
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