NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1000218

Scaffold Ga0208383_1000218


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1000218 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11222
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (31.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010516Metagenome302Y
F021219Metagenome219N
F060487Metagenome132N
F070722Metagenome122N
F071820Metagenome121N
F086514Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208383_100021813F010516AGGMNSYAVWVPTNTGRYLLTFPSLDEAYLFIIKFGGGLEVVSNTYENF
Ga0208383_100021814F070722N/AMNDDLLKQALAQIGRKGGLSTSDKKRASSRLNAAKATEARLKRQKPVKGHRIAPNEKVE
Ga0208383_100021818F060487N/AMMKNKRTPTKVSQVKELQAQIKHLQMIVASRELDVEILEEQINTMEHNRLLNRVKRFFLRDTKL
Ga0208383_100021819F071820N/AMSQQRSKATSWASLLQNEIKATEKKPVGRGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA
Ga0208383_100021821F086514AGGMMINPLNAICVQSGIPNSILQQESIDEPIVAARLHEMDIKEYLREMGRKGGKARAAKLTPEERTRSALYAVSMREYLKELKKKKSS
Ga0208383_100021822F021219N/AMLRDEMKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNRPWDTENTYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVAEQEIEE
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