NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1011536

Scaffold Ga0208383_1011536


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1011536 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1108
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036062Metagenome170Y
F041555Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0208383_10115361F041555N/AAREVITGYMQTHPTVSDSIPQDRARARAWALHNVTLDHTALEAALRQHYATMYVTGVASTYEAFGKQLRQRKAAKQPPHNWNPSAFAVNALQNAVNWDTWKPGNPAAAALLKPPGGLEKLLNGIKIKSLDMKKTSYDLLGSRLADGIAIGASPNQLADMIESSLSSPERALTIALTEGSRAANQAATDSFQALGVEQIEWVSAEPDDEDCDIGGETVNVGEEFSNGLTADDIPVHPNCRCTTTPAEINWDTFDYGASLDAALAQD
Ga0208383_10115362F036062AGGAMALNHNNITVGTTPTPIVTIPNGVGYVAVQVNNRDSAAIFLGDNAVTNTVGINGGQNLAASASVQIWLHGNDTLYAVSAAGTATGAVS
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