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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025358 Open in IMG/M |
| Scaffold ID | Ga0208504_1000030 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 40181 |
| Total Scaffold Genes | 67 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (70.15%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015431 | Metagenome | 254 | Y |
| F050109 | Metagenome / Metatranscriptome | 145 | N |
| F051642 | Metagenome | 143 | N |
| F062381 | Metagenome | 130 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208504_100003016 | F062381 | N/A | MCKDQHWSVKDNQLVLDTPEGQEILKQVINVIRAQTRLEIYEQICALPVTQDRKKLVKLGIENVALQVQDLCAQIALGEK |
| Ga0208504_10000305 | F051642 | N/A | MSEVVKFPTRYKELESELLPSKGTQGERVSGSGESSPIPVRLETLHLRSGGISVPLMEHEQKMREIRHEMKITWHGERRMDELARIILTTQYISKRSEWIRSEYPEADKLVVTIITTTNKIKMVLGHKSEDIVLGKCPSVNEEGKPCGASLRVNPNQLERLLEVKCRACDTIWSSDKWRLLGKVLQG |
| Ga0208504_100003050 | F015431 | AGGA | MALVGRQAVRSVLANFIGQPNVQGLNQVFTSFPKRIDFAVNALPSQQSRAAAVIHIESERETRLAIGGATSGIKQVDYTVVIQVFHHSMERDSQDAMDDFDLTIDNLKEKLRSDHTFGDPSSNLVWQGAEPAIDVSYGEPVSNDGTSTETWASLRFTVTQMIQA |
| Ga0208504_100003056 | F050109 | N/A | MHWPSHGAAVRLASRHADQIRKGFQKAFNADDIVERWFHAHIGSQSTTTRQARDWARSSITPDKKALLDALKPLYADGWVLGTTAAQEALKGVQKAPSVGVVDWQTWTPGNQAAAALIKPKNALQGLLDRRGIVIDGISQTKIDRIGTVLGDALAQGITPSKVSILVDQVINDPQQALTIAQTEMSRAVSVASRNLYQDSGVEQVEWLVAEGCEDCQENADASPIGIDETFPTGDTEPPAHPNCMCSLAPYIDTSTLGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |