Scaffold Ga0208504

Basic Information
Taxon OID	3300025358 Open in IMG/M
Scaffold ID	Ga0208504_1000040 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025358 Open in IMG/M

Scaffold ID

Ga0208504_1000040 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36067
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (76.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36067

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (76.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001201	Metagenome / Metatranscriptome	749	Y
F038015	Metagenome	166	Y
F043746	Metagenome	155	N
F066312	Metagenome	126	N
F075507	Metagenome	118	N
F078139	Metagenome	116	N
F096344	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208504_100004012	F001201	N/A	MYKEGRQIVTDIAHEIDGVVKDVKTVQKKAKGLFGFLSAVFGKKEEVQLEVAQPAKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNALKNYVKEQEEFALHANNDEGQEAAIKITIANLQMEKLNTELSDYMVYHVPNELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWKRQQKADLIKGRMVALAITALIMMYAWIMILSLTHSQSY
Ga0208504_100004015	F038015	AGG	MIAWLFGDLFYWIALIALAGGAILYVLSYFVGFIPMLKAHAMICKVVGLLLVLSGGFYVADNHGYQRRVAEDKAEIDRLNAEARAKEAELSIKLARASSQLKKAKDDIKTKQASIDSRIDSGELQLPNTCGVQASSDAPNGNTTNGSESTRQALKDIVQIATEGDTAITSLNSCIGQYNQVREMVNVKP
Ga0208504_100004023	F066312	AGTAG	MKIELIVEHYAKLAIKPAWLDYVRQQVKLLEQEPAFHGIGKLIAQRIKELNADRHV
Ga0208504_100004032	F096344	AGG	MTDLKEEYYFEYMEELSYKRYTQVLSRYPNCRDPEHPECELCREEENEEN
Ga0208504_100004033	F075507	GAGG	MKKIKDKTKEQLHDEIMGLFLGQEMWTTLEALIETTVGVAEHMELDRFDLMRLIMSELELYEEMESVQ
Ga0208504_100004043	F078139	AGGA	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAVTEQSETPQ
Ga0208504_100004059	F043746	GGAG	LNWKITNIEQTDGLITHADYFVSLTDVTNTVETQGTHTFANPSLKTPFDEVKEQNVIDWIIQETSQDGINLIQSNLEKQLVQKEASSLPWVFKTFKPTLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208504_1000040

Overview

Ecosystem & Geography

Associated Families

Sequences