NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208504_1000931

Scaffold Ga0208504_1000931


Overview

Basic Information
Taxon OID3300025358 Open in IMG/M
Scaffold IDGa0208504_1000931 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6497
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F037510Metagenome167N
F091106Metagenome107N
F098365Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208504_100093110F037510AGGAGMIKLTYEHICDGCKKTLDTEVYECSDYPGMEFPKTHRMFSFHWQGLNAQLCKECAKPLYEAQRQTMEIIIANRKENED
Ga0208504_100093117F091106GGAGMNKRLIPTTQLRWVDKKYYYYDSYDSQNQTIAVLEQWHQNEVLTENQGWQTVEGGEWKEIKKEQNP
Ga0208504_100093118F001629GGAGGVEGNKKGAKSMNFSQGKLADSLVEEMLELIHKYDEALYTATAIGCLELVKQQLIIDVMESENE
Ga0208504_10009316F098365AGGAGMNEEYAFHSPPEPNVKFRLGKDSNIIFHCHVPKPPNAFQRWMLKTFLGIYMELIND
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