NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208504_1009732

Scaffold Ga0208504_1009732


Overview

Basic Information
Taxon OID3300025358 Open in IMG/M
Scaffold IDGa0208504_1009732 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F030333Metagenome185Y
F032569Metagenome179Y
F034448Metagenome174Y
F040990Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0208504_10097321F032569N/AAFNTAYWNAKRTLPVEHLELPRQYGQRWREAFRCRVDSKSPPGEYYYIFDNDADYTWFMLRWG
Ga0208504_10097323F040990N/AMNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSTRVWLENANGVYMIKPTWDAKRHRVDKHEFTMVKLRARTIKWWHDEPE
Ga0208504_10097324F015302GGTGGMSQNDYYANTASRLDTIIGGDTSHFLRLQRVKNEYDTLADTVPVGQGFLTFYDYVKEYYGVKLVYDGDDLKLEYAVVDERKYTMFLLKFGR
Ga0208504_10097325F034448N/AMYVNNFSLPRPPKEVLARCQEVIVNDPAFRMWKMKQFCRENNLSLVWSELVDTTDVSAFFDEAAAFYFIDPADATFFRLRFK
Ga0208504_10097326F030333N/AMATERNTYLTVPVKTYSHYTECEPWCLTNIGEWNIAWWRDFPDIAAAVITEGPHEDCYWFANDRDALMFR
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