Basic Information | |
---|---|
Taxon OID | 3300025358 Open in IMG/M |
Scaffold ID | Ga0208504_1009732 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1407 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015302 | Metagenome | 255 | Y |
F030333 | Metagenome | 185 | Y |
F032569 | Metagenome | 179 | Y |
F034448 | Metagenome | 174 | Y |
F040990 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208504_10097321 | F032569 | N/A | AFNTAYWNAKRTLPVEHLELPRQYGQRWREAFRCRVDSKSPPGEYYYIFDNDADYTWFMLRWG |
Ga0208504_10097323 | F040990 | N/A | MNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSTRVWLENANGVYMIKPTWDAKRHRVDKHEFTMVKLRARTIKWWHDEPE |
Ga0208504_10097324 | F015302 | GGTGG | MSQNDYYANTASRLDTIIGGDTSHFLRLQRVKNEYDTLADTVPVGQGFLTFYDYVKEYYGVKLVYDGDDLKLEYAVVDERKYTMFLLKFGR |
Ga0208504_10097325 | F034448 | N/A | MYVNNFSLPRPPKEVLARCQEVIVNDPAFRMWKMKQFCRENNLSLVWSELVDTTDVSAFFDEAAAFYFIDPADATFFRLRFK |
Ga0208504_10097326 | F030333 | N/A | MATERNTYLTVPVKTYSHYTECEPWCLTNIGEWNIAWWRDFPDIAAAVITEGPHEDCYWFANDRDALMFR |
⦗Top⦘ |