NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208382_1000492

Scaffold Ga0208382_1000492


Overview

Basic Information
Taxon OID3300025369 Open in IMG/M
Scaffold IDGa0208382_1000492 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13263
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027087Metagenome / Metatranscriptome195Y
F086513Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208382_100049216F086513AGGAMNKTPQSNAVKAIKTATSLAETNGWDIDPPADQPNTTPSEPLYDLEGLMTDFPTAKELEKFVFDQTGFVLNLKGRSNKFKYQTAMDVLNGVTPESYMLGSENPYLDKNDLIPVDELKKLPARPAEVIGVPHVTSFISKAFPHPDPEFKASGQKCEVIFRKYVNNAITYEILGPITTKPVGTRVNKFGKEVPEKYTWIDPRTGEQLLRSSNGTYTPVGTRLKAQMQKAKINKSDYWTMWIDRDFIMGGNNGNSLDSPWDFS
Ga0208382_100049217F027087GGAMTPINPNVRATLHLKQVEETKIMQKVNAVQRIGFAEKFPGQVEHCLRLVMERLQLGLDKRDGVDPSNPDTWRLSSQEILDLANSAKLLNDIRSGF
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