NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208382_1019504

Scaffold Ga0208382_1019504


Overview

Basic Information
Taxon OID3300025369 Open in IMG/M
Scaffold IDGa0208382_1019504 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)928
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023279Metagenome / Metatranscriptome210N
F035195Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0208382_10195041F035195AGAAGMEYRTLKTEAEVVELVQDSLNNVETEKSFEDNYEVMLKLFCAIKRLKSIRPKGTFRAVGVSFKQTSTPQK
Ga0208382_10195042F023279GAGMADSSKENTEAIVDTIKSELAIGFKNCIDKIDTGKKVVDRYNWEIYVKVNKILHNSRRLDPQWAIEGDIGNSWSLRSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTNNPGWSTNKTRRSSPILLTPTQIGLQEENTS
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