NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209224_1004349

Scaffold Ga0209224_1004349


Overview

Basic Information
Taxon OID3300025371 Open in IMG/M
Scaffold IDGa0209224_1004349 Open in IMG/M
Source Dataset NameHypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2661
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameMonarch Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028973Metagenome190Y
F057170Metagenome / Metatranscriptome136N
F063429Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209224_10043491F028973AGGTGGVAQIEEEEKRAQETVDDIIRRLEEYHVNGNWDEFFDNDALDVLLLTTPDKEDIFGFSILLSYGGPNVEFLCDRGDGKIIYSYGGVEVKKDIDPEICDDIINYLDS
Ga0209224_10043492F057170GAGGMTTRGLIEVFNSKNELLSRIYVHGDMYPSDGVMCEVVKFLDKRYLVNGIPPDGHFDVVNGMDNLAALVTAHLISWYTKIIRRFSDVKKNDLAAGYVYLYPFNLDIKDTDVEYIYELRPMMDEEKLVYPGGAQKVLDVVRVTAKRYEWWNGTGPTDIFDGPLRDFAKQYCKA
Ga0209224_10043493F063429GAGGVGKVIDPSVREELAGKRIWDTDMSEEQIKIAERIESAFINSFEQDIESGIVPWADANNIIEYMDYMAQEGLGSEDLIEYLAKRSGIGPDAFKQTWAKLTDEQKIDVLNSIAHKIAYRGLEELLKTIVDDLNRQRKYRKDRGWILVTALDYAFKVQKVGYDWLENVITNVLWPAKKKKKDRKAYEDFVRGLDLAYYLNEEELEDLIVEYLVFGLAEKC
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