NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207957_1000020

Scaffold Ga0207957_1000020


Overview

Basic Information
Taxon OID3300025372 Open in IMG/M
Scaffold IDGa0207957_1000020 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40136
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (38.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010516Metagenome302Y
F021219Metagenome219N
F027088Metagenome / Metatranscriptome195N
F060487Metagenome132N
F086514Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0207957_100002018F021219GAGGMKTDPTLDVTPVNVAIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNRPWDTENTYSCSLDTFHVGWIHPESEKAKANEMGLSLEDYRAFVAEQEIEELEWQRYLREKRGHDKYYEEAPV
Ga0207957_100002019F086514AGGMLINPLSSIYTQSGIPNSNLQQESIDESIVAARLHEMDIKEYMRELGRKGGKARAAKLTPEERTRSALYAVSMREYLKELKKKKTS
Ga0207957_10000202F027088N/AMKKLLILALLALPLVSKAQLVQSPEYSWRVQICDLTYNNNQQLTACPVTVFYQSTITNGGAFVSNVQSVPQTLSVDLVAQAASTVVYNGTTYTYGQALGIMNAIFAQERTAELANAAKASSVSAPQTTQNLSPVVTTNNTK
Ga0207957_100002022F060487N/AMMKNKRTPSKVSQVKELQAQIKHLQMIVASRELDVEILEEQIATMEHRSLWNRIKRLFSLRDTTL
Ga0207957_100002026F010516N/AMNQDPYAVWVPTNTGRYLLTFATLDEAYLYIIRFGGGLEVVPNTYENF
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