NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207957_1009374

Scaffold Ga0207957_1009374


Overview

Basic Information
Taxon OID3300025372 Open in IMG/M
Scaffold IDGa0207957_1009374 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1381
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010669Metagenome / Metatranscriptome300Y
F012769Metagenome / Metatranscriptome277N
F065718Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0207957_10093741F010669N/AMELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEVKCRLHAYISHEQEILAELLSELESEVQTSSENITVERIKRCFRCIDDIIEYATQFLKQARLIEMRDFTGFYYEIENDAKQAIRQALTVLSTLRRGNLSRLASSVKELVKELDDIRILVSKKTLEQVEETLQEYGTRRTYTLRQ
Ga0207957_10093742F012769AGAAGMQFQYPKFKVKELVKDKFDPILEEEYQEETAMKVFKASIEVIRQSGNKLTEQHYLPYSPEEKEVVIKEVIVQISEWKNRILNRRQKEKITRIDRALSKKILDILAEYLTALEETDLAKRQKQLYHVDAVAAITELRVNRKFASPERKPVKRKIH
Ga0207957_10093743F065718N/AGLISYKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLRAIHPNWEMYLEDSKNHHFCKCLQCSEVKRRYQEMLDATSSEESNSE
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